User: supermanrocketboy

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Posts by supermanrocketboy

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GEOquery: Diagnosing SOFT file error
... I've been successfully using GEOquery to download GEO datasets. I came across one (GSE56046) whose SOFT file seemed too small for the number of samples, and I get a lot of downstream errors (see below).    Before contacting the submitter, can anyone spot what the issue is?     This command downl ...
geoquery geo soft files geo data written 20 months ago by supermanrocketboy10 • updated 20 months ago by Sean Davis21k
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Comment: A: minfi::read.metharray.exp error ("The following specified files do not exist")
... Thru extra sleuthing, I found out that I was missing a single "_Red.idat" file for one of my samples.  #problemsolved ...
written 3.0 years ago by supermanrocketboy10
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minfi::read.metharray.exp error ("The following specified files do not exist")
... I get an error when trying to create my RG set. library(minfi) baseDir <- "K:/IDATS" targets <- read.metharray.sheet(baseDir) RGSet <- read.metharray.exp(base = baseDir, targets = targets, verbose=T) Error in read.metharray(files, extended = extended, verbose = verbose, : The followi ...
minfi read.metharray.exp written 3.0 years ago by supermanrocketboy10

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Popular Question 20 months ago, created a question with more than 1,000 views. For minfi::read.metharray.exp error ("The following specified files do not exist")

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