User: story.benjamin

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Posts by story.benjamin

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rtracklayer - export.bw bug
... Hi, A colleague approached me in hopes of figuring out a strange export problem they were having with rtracklayer. For some reason it seems that when I have over 255-256 chromosomes (manual tested this) in a genome, that certain chromosome(s) are lost during the export of a bigwig. This was notice ...
rtracklayer bigwig export.bw written 13 months ago by story.benjamin0 • updated 13 months ago by Michael Lawrence9.8k
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Comment: C: Empty SQL query result for SRA run
... I am also getting this error for specific datasets. It seems somewhat random. SRP051830 is an example of one that doesn't work.   EDIT: What did work is to set the fileType = 'sra'  ... so perhaps it's an issue with fastq availability. Downside is obviously that you have to do the sra --> fastq ...
written 13 months ago by story.benjamin0

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