User: ew17

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ew170
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Posts by ew17

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Comment: C: dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : repla
... Sorry about the separation; the 5000 character limit kept having issues. [61] GenomicFeatures_1.22.13  annotate_1.48.0          knitr_1.14               [64] beanplot_1.2             igraph_1.0.1             rngtools_1.2.4           [67] corpcor_1.6.8            reshape2_1.4.2           codetools_0 ...
written 13 months ago by ew170
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Answer: A: dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : repla
... sessionInfo(): R version 3.2.2 (2015-08-14) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.11.2 (El Capitan) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages:  [1] splines   stats4    parallel  stats     graphics  grDevices util ...
written 13 months ago by ew170
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Comment: C: dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : repla
... Sorry about the delay; I didn't see your response until now. The output of traceback() is: 4: stop(sprintf(ngettext(N, "replacement has %d row, data has %d",         "replacement has %d rows, data has %d"), N, nrows), domain = NA) 3: `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) 2: `$< ...
written 13 months ago by ew170
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dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : replacement has 0 rows, data has 1963
... Hi all, I am using DMRcate to find differentially methylated regions in illumina 450k data. I'm fairly new to R and DMRcate, so I've been following the User Guide example pretty closely. When I get to the dmrcate(myannotation, lambda=1000, C=2) call, I get an error: "Fitting chr1... ... Fitting ...
dmrcate written 13 months ago by ew170 • updated 10 months ago by Tim Peters60

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