User: jonessara770

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jonessara77010
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Posts by jonessara770

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MLSeq package output
... Hi,   I am using MLSEQ package. I don't know how to get the AUC value or ROC when i use random forest algorithm. my data are rnaseq any thought?   Thanks S       ...
rnaseq written 11 months ago by jonessara77010
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MLSeq plot results
... Hello, I am using MLSeq and I would like to plot Accuracy , ROC, AUC ect. Would you please help me how I can  do it? which object I should use?   Thanks   ...
mlseq written 11 months ago by jonessara77010
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Answer: A: MLSeq package error
... > sessionInfo() R version 3.3.1 (2016-06-21) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.12.1 (Sierra) locale: [1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8 attached base packages: [1] parallel  stats4    stats     graphics  grDevices utils     datase ...
written 12 months ago by jonessara77010
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Comment: C: MLSeq package error
... > sessionInfo() R version 3.3.1 (2016-06-21) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.12.1 (Sierra) locale: [1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8 attached base packages: [1] parallel  stats4    stats     graphics  grDevices utils     datase ...
written 12 months ago by jonessara77010
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MLSeq package error
... Hello, I would like to use MLSeq package but I am getting this error.   > library(MLSeq) Error : object ‘bag.default’ is not exported by 'namespace:caret' Error: package or namespace load failed for ‘MLSeq’     would you please help me to overcome this error?   Thanks Sara ...
software error written 12 months ago by jonessara77010
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Bioconductor packages for machine learning with RNAseq
... Hello all, can you please give a list of packages that have been developed to apply machine learning models on RNAseq data?   Thanks Sara ...
bioconductor written 12 months ago by jonessara77010 • updated 12 months ago by Wolfgang Huber13k
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How to compare SomaticSignatures package profiles with signatures listed by the Sanger Institute
... Hello, I am using SomaticSignatures package to find signatures in my data. I wonder how i can compare my results with signatures listed by the Sanger Institute (Figure 2 in the paper below)? Signatures of mutational processes in human cancer http://www.nature.com/nature/journal/v500/n7463/full/nat ...
somaticsignatures written 12 months ago by jonessara77010 • updated 12 months ago by Julian Gehring1.3k

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