User: chitsazanalex

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Posts by chitsazanalex

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Comment: C: Split Genome into 2kb bins GenomicRanges
... Oh man, that is EXACTLY what I was looking for. Thank you ...
written 7 weeks ago by chitsazanalex0
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Split Genome into 2kb bins GenomicRanges
... Is there a way to split the entire genome into a genomicRanges of 2kb bins? Im thinking something along that line that uses `seqlengths()` to get chromosome length and then some function to split into 2kb bins, with a GRange for each bin. It's that 'some function' i can't seem to find.    ...
genomicranges written 8 weeks ago by chitsazanalex0 • updated 8 weeks ago by Hervé Pagès ♦♦ 13k
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Error with DESeq2 installation
... Im getting the error when trying to install DESeq. I'm installing this on a university cluster interactive node.   > biocLite("DESeq2") BioC_mirror: https://bioconductor.org Using Bioconductor 3.4 (BiocInstaller 1.2 ...
deseq2 installation rccparmadillo written 8 months ago by chitsazanalex0 • updated 8 months ago by JunLVI40
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Comment: C: GenomicFeatures makeTxDbFromBiomart fails with "unkown species" error
... This solved the problem, thank you ...
written 9 months ago by chitsazanalex0
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Comment: C: GenomicFeatures makeTxDbFromBiomart fails with "unkown species" error
... I'm getting the same error? Weirdly, it works if I use an archived 'host'="jul2016.archive.ensembl.org" > CanFam.txdb <- makeTxDbFromBiomart(biomart = "ENSEMBL_MART_ENSEMBL", + dataset = "cfamiliaris_gene_ensembl", + hos ...
written 9 months ago by chitsazanalex0
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Comment: C: rtracklayer - export.bw bug
... Is there a way to download version 1.35.1? and or a work around hack to get this to work under current framework? I'm having a similar problem that is affecting pipelines but the latest update of rtracklayer is 1.34.0 ...
written 12 months ago by chitsazanalex0

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