User: mmarins

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mmarins0
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Posts by mmarins

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Answer: A: Error: could not find function "dba"
... Dear Rory,        Thanks...I got it. It loaded. Wrong labelling from a stupid beginner with line commands in R. I used  peakFormat="bed" and it worked. Then I went once again to see what was wrong and I got it...PeaksCaller instead of PeakCaller...in the computers grammar world, they do (up to no ...
written 12 months ago by mmarins0
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Answer: A: Error: could not find function "dba"
... Hi Rory,     Solved the one before but now I get     U2OS U2OS p53 not-treated DMSO 1 raw Error in Summary.factor(c(1L, 9875L, 10986L, 12097L, 13208L, 14319L, 15430L,  :    ‘max’ not meaningful for factors   Best, MOzart ...
written 12 months ago by mmarins0
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Answer: A: Error: could not find function "dba"
... Hi Rory,       I fixed the last error by taking the tamoxifen sample sheet and opening it in Excell. When I open it, all the data is in one column (A1) separated by comma. When I did my samplesheet I have put each data in one column and saved as a CSV file. Now, I did exactly as in the tamoxifen sa ...
written 12 months ago by mmarins0
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Answer: A: Error: could not find function "dba"
... Dear Rory,      Would it be that my Score column should have values between 1 and 1000? But actually I have values above that? Best, Mozart ...
written 12 months ago by mmarins0
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Answer: A: Error: could not find function "dba"
... Hi Rory,      Files look like this chromosome start end name score chr1 28088 30326 MACS_peak_1 1610.56 chr1 51499 52148 MACS_peak_2 63.34 chr1 441771 442612 MACS_peak_3 117.63 chr1 540241 541202 ...
written 12 months ago by mmarins0
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Answer: A: Error: could not find function "dba"
... Hi Rory,      I have set up a csv file with the colums SampleID Tissue  Factor  Condition Replicate  bamReads bamControl  Peaks PeakCaller p53CTRL U2OS p53 1control 1 p53ctrl.bam input.bam p53ctrlpeaks.bed MACS2 p53TCHAL ...
written 12 months ago by mmarins0
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Answer: A: Error: could not find function "dba"
... Dear Rory, Thanks. The dba function is now there after the manual instalation. But now I got the second basic step. I have a control file (control.bed) and test experiment (test.bed) which I got from Macs2. I don't understand how to build that samplesheetfile or proceed to a differential analys ...
written 12 months ago by mmarins0
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Answer: A: Error: could not find function "dba"
... Hi Rory,         Sorry with such simple things but I installed Diffbind and got this:        package ‘DiffBind’ successfully unpacked and MD5 sums checked The downloaded binary packages are in     C:\Users\mmarins\AppData\Local\Temp\RtmpcPzIwo\downloaded_packages   Then I typed > library(D ...
written 12 months ago by mmarins0
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Error: could not find function "dba"
... Please,     I have tried the tutorial of diffbind after installing and re-stalling the Rstudio, bioconductor and diffbind...but the dba function doesn´t go...it always come Error: could not find function "dba". I am an idiot with line command, so pelase, can somone tell me what to do? All I want is ...
diffbind software error dba written 12 months ago by mmarins0

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