User: angela.ubn

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angela.ubn0
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Posts by angela.ubn

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Answer: A: Change point size and remove outline in scater's plotPCA
... If you need to change the size and shape, you probably need to convert the associated attributes as a factor.  e.g.   New_sceset$sc3_7_clusters <- as.factor(New_sceset$sc3_7_clusters) New_sceset$cell_type <- as.factor(New_sceset$cell_type) p <- plotPCA(New_sceset, colour_by = 'sc3_7_clu ...
written 5 months ago by angela.ubn0
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SC3 Package: marker genes and normal genes obtained from featureData
... Hey cool SC3-developers, I have a question about marker genes and normal genes. As I understood, marker genes are highly expressed genes in one cluster and have abilities (filtered by padj, ROC) to distinguish this cluster between others.   Concerning normal genes that cannot pass the threshold in t ...
sc3 written 9 months ago by angela.ubn0 • updated 8 months ago by Vladimir Kiselev130

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