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Pathway Analyis for C-difficile microarrays
Organism Organism
13.1 years ago Claus Mayer ▴ 340
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Comment: C: Reg: T-statistic using limma
14.1 years ago Claus Mayer ▴ 340
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1.4k
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Answer: A: Reg: T-statistic using limma
14.1 years ago Claus Mayer ▴ 340
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3.5k
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Answer: A: Limma and logistic regression
14.2 years ago Claus Mayer ▴ 340
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Comment: C: FW: duplicates, technical and biological replicates + dividing a microarray into
14.3 years ago Claus Mayer ▴ 340
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Answer: A: MA plots + dye swap
14.3 years ago Claus Mayer ▴ 340
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1.4k
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Answer: A: Package on clinical data analysis
14.3 years ago Claus Mayer ▴ 340
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1.5k
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Answer: A: Positive correlation between dye-swap technical replicates
14.3 years ago Claus Mayer ▴ 340
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1.1k
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Answer: A: globaltest mulitple testing correction
15.5 years ago Claus Mayer ▴ 340
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1.1k
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Comment: C: Question about F test in limma
16.0 years ago Claus Mayer ▴ 340
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Comment: C: False Discovery Rate Questions
16.1 years ago Claus Mayer ▴ 340
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Answer: A: How does limma know how to correct dye effect with a column of "1"s
16.1 years ago Claus Mayer ▴ 340
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Answer: A: Application of multiple testing correction in the context of using Stouffer's me
16.1 years ago Claus Mayer ▴ 340
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Comment: C: SAM siggenes number of permutations
16.3 years ago Claus Mayer ▴ 340
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Answer: A: SAM siggenes number of permutations
16.3 years ago Claus Mayer ▴ 340
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891
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Answer: A: RMA biomodality, distribution and transformation
16.3 years ago Claus Mayer ▴ 340
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Answer: A: Limma and Dye Flips
16.3 years ago Claus Mayer ▴ 340
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Problem with printing maQualityPlots to ps-files
16.5 years ago Claus Mayer ▴ 340
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2.2k
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Answer: A: Minimal group sizes in permutation tests
16.5 years ago Claus Mayer ▴ 340
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Comment: C: question on limma package
16.8 years ago Claus Mayer ▴ 340
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Answer: A: Sample size calculation - microarray experiemnt
16.8 years ago Claus Mayer ▴ 340
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Comment: C: quantile normalization of one dataset to another
17.0 years ago Claus Mayer ▴ 340
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Comment: C: Annotating HGU133plus2 genes with number of coding changes
17.1 years ago Claus Mayer ▴ 340
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445
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Answer: A: correlation between M values of replicate arrays
17.3 years ago Claus Mayer ▴ 340
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1.9k
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Answer: A: Some Genefilter questions
17.4 years ago Claus Mayer ▴ 340
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1.3k
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Comment: C: F-test vs.T-test-on-differences
17.5 years ago Claus Mayer ▴ 340
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F-test vs.T-test-on-differences
updated 17.5 years ago by ★ 6.0k • written 17.5 years ago by ▴ 340
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Comment: C: RMA-bimodality:
17.9 years ago Claus Mayer ▴ 340
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Comment: C: RMA-bimodality:
17.9 years ago Claus Mayer ▴ 340
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Analysing a timecourse/loop experiment without replication with limma
TimeCourse limma limmaGUI timecourse TimeCourse limma limmaGUI timecourse
updated 18.7 years ago by ★ 6.0k • written 18.7 years ago by ▴ 340
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Agilent Arrays
affy limma marray affy limma marray
updated 18.9 years ago by ▴ 30 • written 18.9 years ago by ▴ 340
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Comment: C: Increase in CV of replicated spots after normalization?
18.9 years ago Claus Mayer ▴ 340
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1.3k
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Answer: A: Wilcoxon test [was loged data or not loged previous to use normalize.quantile]
19.1 years ago Claus Mayer ▴ 340
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