User: rraadd_8
rraadd_8 • 0
- Reputation:
- 0
- Status:
- New User
- Location:
- Last seen:
- 1 year ago
- Joined:
- 1 year, 5 months ago
- Email:
- r*******@hotmail.com
Posts by rraadd_8
<prev
• 6 results •
page 1 of 1 •
next >
0
votes
1
answers
1.2k
views
1
answers
... The answer of the question was indeed in the primary assumption of the tool itself. I should have taken that into account before going ahead.
Remark 1 in particular is a very helpful general advise in this respect.
Thanks a lot. solved!
...
written 12 months ago by
rraadd_8 • 0
0
votes
1
answers
1.2k
views
1
answers
... Yes. I wanted to `see whether one condition is more noisy than the other`.
Biological question I was trying to answer was:
`How much is the noise in my experiment (trt vs untrt)?`
what I have is
1. counts (3 replicates each for trt and untrt) and
2. a DESeq2 result (log2FoldChange, lfcSE etc.) obta ...
written 12 months ago by
rraadd_8 • 0
0
votes
1
answers
1.2k
views
1
answers
... sorry for the confusion. I am using "standard error: condition treated vs untreated" (from results columns) for the calculation.
So, I meant individual calculation of variance associated with each LFC.
So then the idea is to take sum of variances and divide it by square of n - which would give me ...
written 12 months ago by
rraadd_8 • 0
0
votes
1
answers
1.2k
views
1
answers
... I have a question regarding the application of standard error. To get cumulative (gene-wide) error (noise) per condition I can do following steps.
I can get variance (VAR) of each gene by multiplying standard error (SE) by square root of total number of genes (n) and then squaring it.
VAR=(SE*sqr ...
written 12 months ago by
rraadd_8 • 0
0
votes
1
answers
291
views
1
answers
... Thanks. I wonder if it is possible, (independent of DeSeq2) to use Wald test for negative numbers?
...
written 17 months ago by
rraadd_8 • 0
2
votes
1
answer
291
views
1
answer
... Dear users,
Instead of counts (non-negative integers) required by DeSeq2, I have negative numbers and fractions,
and I need to use DeSeq's statistics to find out significantly up/down genes.
Since for my data, min=-10 and max=10, I can convert it into counts by
first multiplying with a consta ...
written 17 months ago by
rraadd_8 • 0
• updated 17 months ago by
Michael Love ♦ 17k
Latest awards to rraadd_8
No awards yet. Soon to come :-)
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.2.0
Traffic: 379 users visited in the last hour