User: divyswar01

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divyswar010
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Posts by divyswar01

<prev • 5 results • page 1 of 1 • next >
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Curated Data Package in Bioconductor
... Are there any guidelines on data packages in bioconductor. I am interested in contributing a curated data package from specific TCGA dataset. I would like to know how the data should be formatted and how big the data can be in the package.  ...
data package written 3 months ago by divyswar010
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Comment: C: cpgDensityCalc function in Repitools giving contradictory tools
... As I have though it it the wrong genomic build that lead to this spurious results. ...
written 20 months ago by divyswar010
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Comment: C: cpgDensityCalc function in Repitools giving contradictory tools
... I am guessing it is a problem with the reference genome that I have been using. I will update after checking on that. ...
written 20 months ago by divyswar010
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cpgDensityCalc function in Repitools giving contradictory tools
... I am using cpGDensityCalc function in repitools package to calculate the cpg density for my data. Following is the code that I am using. library(Repitools) library(BSgenome.Hsapiens.UCSC.hg19) cpgd<-Repitools::cpgDensityCalc(granges(bs),organism=Hsapiens,window = 1000) and when I look at min(c ...
repitools bioconductor cpgdensitycalc written 20 months ago by divyswar010
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Annotatr package not loading certain features
... I am trying to load some features through annotatr package and I got the following error message  'select()' returned 1:1 mapping between keys and columns Building promoters... snapshotDate(): 2016-11-15 Building CpG islands... downloading from ‘https://annotationhub.bioconductor.org/fetch/5086’ r ...
annotatr written 2.0 years ago by divyswar010 • updated 2.0 years ago by Valerie Obenchain ♦♦ 6.7k

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