User: Earendil

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Earendil0
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Posts by Earendil

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Comment: C: DESeq2 to clustered metagenomic data
... Dear Mike, I think I need to mention that samples G1-G5 and W1-W5 are not treated as biological replicates in my analysis since the sample treatment varies within these to groups from sample to sample. However I would guess that this doesn't change anything since the default is BLIND = TRUE. I'm no ...
written 11 months ago by Earendil0
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Comment: C: DESeq2 to clustered metagenomic data
... Dear Mike, It looks like this for the Pathways (here are 20, in total are 91):                                             G1 G2 G3 G4 G5 W1 W2 W3 W4 W5 ABC transporters                             0  0  0  0  0  0  0  4  0  2 Alanine, aspartate and glutamate metabolism  0  0  0  0  0  0  2  2  0 ...
written 11 months ago by Earendil0
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DESeq2 to clustered metagenomic data
... I am having metagenomic data from soil samples, which were generated by a sequence capture method. That is, probes where designed based on desired genes that we wanted to capture from the micro-organisms in the samples. The reads were assembled and the contigs were functionally annotated by KEGG, th ...
metagenomics deseq2 written 11 months ago by Earendil0 • updated 11 months ago by Michael Love14k

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