User: julrodr80

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julrodr8020
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Posts by julrodr80

<prev • 21 results • page 1 of 3 • next >
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Calculate the CNV frequency in a dataset
... I would like to calculate the frequecy of renomic region (CNV) in a data of genomic regions detected. I tried to do with overlap, but I was not able to do it.   Thank you very much ...
cnvtools genomicranges written 6 months ago by julrodr8020
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Filter CNVs if contain certain gene
... I have a GR objetc, a list of cnvs with its genes; its possible to subset this cnvs if they have al least one gene of a list of genes? ...
cnv cnvs genomic ranges written 9 months ago by julrodr8020
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Obtain exactly the interval that overlap
... Its possible to obtain the exact interval that overlap between two GR objects? ...
granges findoverlaps written 11 months ago by julrodr8020 • updated 11 months ago by Michael Lawrence10.0k
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Answer: A: Findoverlaps insame sample
... Hi,  It works. I've tried the last options. ...
written 11 months ago by julrodr8020
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Findoverlaps insame sample
... I have two GR objects with 1000 samples. Each sample, several cnvs (genomic ranges). I would like to find overlaps between the genomic ranges of the two objets, but also with the condition that the overlap region is in the same individual.  seqnames   ranges strand | Sample ...
genomicranges granges findoverlaps written 11 months ago by julrodr8020
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Comment: C: Mapping genome regions to gene symbols
... Yes, is a factor... I`ve already solve the problem. Thanks!! ...
written 11 months ago by julrodr8020
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Comment: C: Mapping genome regions to gene symbols
... Thank you very much @MartinMorgan, but if I do that, the name of the genes is substituted by numbers, why? How can I solve that? Thank you very much and sorry the annoyances ...
written 11 months ago by julrodr8020
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Comment: C: Mapping genome regions to gene symbols
... It works fine @Martin, thank you very much. But I need to export the GRanges object with the SYMBOL column to a data frame, or to print it in a text file, but I can`t, it is possible? thank you very much in advance.   ...
written 12 months ago by julrodr8020
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Comment: C: Mapping genome regions to gene symbols
... ok, thanks. It works perfect. Thank you very much!! Just one thing, you should put the update version of the helper functions (updated here) in your first post, because is confusing... ;) thank you very much!! regards ...
written 12 months ago by julrodr8020
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Comment: C: Mapping genome regions to gene symbols
... @Martin thank you so much I need to trasnform "symInCnv" into a data frame with two columns, exactly like the print ["1"]] AKT3 MIR942 MIR190B MIR760 MIR921 ... FAM20B LPGAT1 KIF14 RBM8A NR1I3 [["2"]] TANK SNORD11B MIR933 LOC100129175 CCNT2-AS1 ... ZEB2 FARP2 TLK1 CD302   because I need the g ...
written 12 months ago by julrodr8020

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