## User: julrodr80

julrodr8030
Reputation:
30
Status:
New User
Location:
Last seen:
2 years, 1 month ago
Joined:
2 years, 11 months ago
Email:
j********@gmail.com

#### Posts by julrodr80

<prev • 21 results • page 1 of 3 • next >
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... I would like to calculate the frequecy of renomic region (CNV) in a data of genomic regions detected. I tried to do with overlap, but I was not able to do it.   Thank you very much ...
written 2.1 years ago by julrodr8030
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... I have a GR objetc, a list of cnvs with its genes; its possible to subset this cnvs if they have al least one gene of a list of genes? ...
written 2.4 years ago by julrodr8030
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... Its possible to obtain the exact interval that overlap between two GR objects? ...
written 2.5 years ago by julrodr8030 • updated 2.5 years ago by Michael Lawrence11k
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... Hi,  It works. I've tried the last options. ...
written 2.5 years ago by julrodr8030
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... I have two GR objects with 1000 samples. Each sample, several cnvs (genomic ranges). I would like to find overlaps between the genomic ranges of the two objets, but also with the condition that the overlap region is in the same individual.  seqnames   ranges strand | Sample ...
written 2.5 years ago by julrodr8030
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... Yes, is a factor... Ive already solve the problem. Thanks!! ...
written 2.5 years ago by julrodr8030
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... Thank you very much @MartinMorgan, but if I do that, the name of the genes is substituted by numbers, why? How can I solve that? Thank you very much and sorry the annoyances ...
written 2.5 years ago by julrodr8030
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... It works fine @Martin, thank you very much. But I need to export the GRanges object with the SYMBOL column to a data frame, or to print it in a text file, but I cant, it is possible? thank you very much in advance.   ...
written 2.6 years ago by julrodr8030
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... ok, thanks. It works perfect. Thank you very much!! Just one thing, you should put the update version of the helper functions (updated here) in your first post, because is confusing... ;) thank you very much!! regards ...
written 2.6 years ago by julrodr8030
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... @Martin thank you so much I need to trasnform "symInCnv" into a data frame with two columns, exactly like the print ["1"]] AKT3 MIR942 MIR190B MIR760 MIR921 ... FAM20B LPGAT1 KIF14 RBM8A NR1I3 [["2"]] TANK SNORD11B MIR933 LOC100129175 CCNT2-AS1 ... ZEB2 FARP2 TLK1 CD302   because I need the g ...
written 2.6 years ago by julrodr8030

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