User: ctruntzer

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ctruntzer10
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1 year, 8 months ago
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2 years, 11 months ago
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Posts by ctruntzer

<prev • 8 results • page 1 of 1 • next >
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Comment: A: Within-sample gene comparison with DESeq2
... Ok, thank you for your answer! ...
written 2.1 years ago by ctruntzer10
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Within-sample gene comparison with DESeq2
... Dear all, I would like to compare the expression of different genes with each other in a single biological condition (for which I have technical replicates). Transcript abundances were quantified using kallisto. I'm a little confused with the output of tximport combined with DESeqDataSetFromTximpo ...
normalization deseq2 written 2.1 years ago by ctruntzer10
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Comment: C: About the best use of frma for several GEO Series
... Thank you for this additional explanation! ...
written 2.9 years ago by ctruntzer10
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Comment: C: About the best use of frma for several GEO Series
... I have an additional question if you mind. When I look at the frma vignette, I read "Summarization refers to the method used to combine probe-level expression values to obtain gene-level expression estimate". However, when I apply frma on my data with the default option (summarize="robust_weighted_a ...
written 2.9 years ago by ctruntzer10
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Comment: C: About the best use of frma for several GEO Series
... Thank you for your helpful answer. ...
written 2.9 years ago by ctruntzer10
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Comment: C: About the best use of frma for several GEO Series
... Thank you for your clear answer. Best, Caroline ...
written 2.9 years ago by ctruntzer10
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Comment: C: About the best use of frma for several GEO Series
... Thank you Stephen for your answer. No, fRMA is not a requirement for my study. I will have a look to your library. Best, Caroline ...
written 2.9 years ago by ctruntzer10
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About the best use of frma for several GEO Series
... Dear all, I have a question about the use of the frma function. I have to put several datasets from GEO series together in a same big analysis. However, for each of these datasets (that is each specific GSE serie) I have to select only some specific patients (selection of specific GSM samples). I ...
normalization preprocessing frma written 2.9 years ago by ctruntzer10 • updated 2.9 years ago by Matthew McCall830

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