User: bioinf

gravatar for bioinf
bioinf0
Reputation:
0
Status:
New User
Location:
Last seen:
3 months ago
Joined:
9 months ago
Email:
g***************@gmail.com

Posts by bioinf

<prev • 21 results • page 1 of 3 • next >
0
votes
0
answers
228
views
0
answers
Comment: C: CoverageView error (bug?)
... Hi, Did you find any solution? ...
written 3 months ago by bioinf0
0
votes
1
answers
97
views
1
answers
Comment: C: TarSeqQC TargetExperiment() Error- failed to stop SOCKcluster cluster-error writ
... Its running since yesterday and got the following error now: Error in `[.data.frame`(info, , "chr") : undefined columns selected In addition: Warning messages: 1: In .local(.Object, ...) : Your bed file have duplicated features. Removing duplicated ... 2: In (function (..., deparse ...
written 3 months ago by bioinf0
0
votes
1
answers
97
views
1
answers
Comment: C: TarSeqQC TargetExperiment() Error- failed to stop SOCKcluster cluster-error writ
... Thanks. I ran it again with the option you mentioned, but TargetExperiment() is taking a lot of time. Do you have an idea how much time it should take to process 1GB bam and 1GB fasta for TargetExperiment()? I am trying to run it from last few days, sometimes it ran for full day too.   ...
written 3 months ago by bioinf0
0
votes
1
answers
187
views
1
answers
Comment: C: TarSeqQC TargetExperiment() example takes forever
... Hello Gabriela, I also ran into some issue with TargetExperiment(), here are the details https://support.bioconductor.org/p/97084/ I hope if you can help me out. Thanks! ...
written 3 months ago by bioinf0
0
votes
1
answer
97
views
1
answer
TarSeqQC TargetExperiment() Error- failed to stop SOCKcluster cluster-error writing to connection
... Hi, TarSeqQC seems to be a wonderful package for TS. I ran it successfully on extdata (test data) on Windows 8.1 64-bit PC as well as Rstudio server, but getting following error while running on my data on Rstudio server (bam=1.2GB, fasta file=1.4GB, bed file=25MB): library(TarSeqQC) library(Bioc ...
biocparallel R ngs tarseqqc written 3 months ago by bioinf0 • updated 3 months ago by Martin Morgan ♦♦ 20k
0
votes
1
answers
164
views
1
answers
Comment: C: Error: HelloRanges eval
... Yes, I checked. ...
written 3 months ago by bioinf0
0
votes
1
answers
164
views
1
answers
Comment: C: Error: HelloRanges eval
... While running: gr_a <- import("1.bedpe", genome = genome) Error: logical subscript contains NAs Edited bedpe file and ran single commands, now again error: cov <- unname(coverage(gr_b)[gr_a]) Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘ ...
written 3 months ago by bioinf0
0
votes
1
answer
164
views
1
answer
Error: HelloRanges eval
... Hi, I am trying to compute the coverage histogram of my bedpe file (converted from paired-end bam file) by following the HelloRanges tutorial, but it gives me error while using eval: >code <- bedtools_coverage("-a 1.bedpe -hist -b org.genome") ​>code { genome <- Seqinfo(genome = ...
bedtools helloranges written 3 months ago by bioinf0
0
votes
1
answers
70
views
1
answers
Comment: C: Rstudio server on Ubuntu 16.04.2 LTS, RStudio initialization error: unable to co
... It would be nice if you can suggest here, it would be useful for other users also. Thanks!   ...
written 6 months ago by bioinf0
0
votes
1
answers
70
views
1
answers
Comment: C: Rstudio server on Ubuntu 16.04.2 LTS, RStudio initialization error: unable to co
... Its the server. Yes I am trying to connect using a web browser on port 8787, which processes for few seconds and then shows the error. ...
written 6 months ago by bioinf0

Latest awards to bioinf

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 190 users visited in the last hour