User: blawney

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blawney0
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Posts by blawney

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Comment: C: DESeq2 multiple factors nested design
... Thanks for responding! I understand it's a bit of a dive-in with the notebook. I initially left out any size-factor correction since DESeq2::makeExampleDESeqDataSet was creating matrices with size factors all pretty close to one based on the default argument to that method.  I tried again with your ...
written 10 months ago by blawney0
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Answer: A: DESeq2 multiple factors nested design
... Resurrecting this thread a bit-- I'm trying to make sense of a similar design I'm working on and I figured I would use the design above as a guide for my understanding.  To that end, I created some mock data for a gene (creating the desired main/interaction effects) and appended it to a count matri ...
written 10 months ago by blawney0

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