User: Puks

gravatar for Puks
Puks10
Reputation:
10
Status:
New User
Location:
Estonia
Last seen:
1 month, 3 weeks ago
Joined:
2 years, 9 months ago
Email:
p*******@gmail.com

Posts by Puks

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Error in getBM
... A previous post on this might be helpful for you: https://support.bioconductor.org/p/121331/ ...
written 3 months ago by Puks10
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Answer: A: Error in biomaRt query - "biomaRt expected a character string of length 1.
... See this previous answer: https://support.bioconductor.org/p/121331/ Here is a copy paste from the reply from Mike Smith on that post: > It might be that the main Ensembl site is being a bit slow today. You > can try querying one of the mirror sites e.g. > > mart <- useEnsemb ...
written 3 months ago by Puks10
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Comment: C: Error in biomaRt query - "biomaRt expected a character string of length 1.
... See this previous answer: https://support.bioconductor.org/p/121331/ Here is a copy paste from the reply from Mike Smith on that post: > It might be that the main Ensembl site is being a bit slow today. You > can try querying one of the mirror sites e.g. > > mart <- useEnsemb ...
written 3 months ago by Puks10
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Comment: C: Paired samples in cell lines using DESeq2
... Thanks Michael! I will change the order. ...
written 3 months ago by Puks10
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Comment: C: Paired samples in cell lines using DESeq2
... Thanks ATpoint! You are correct, there should have been replicates for each cell line but unfortunately the person who performed the experiment did not do it. ...
written 3 months ago by Puks10
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Paired samples in cell lines using DESeq2
... Hi, I would to use DESeq2 to process three bulk RNASeq paired samples but I am trying to figure out what is the valid model to use here. I used tximport to import Kallisto's transcript-level abundance estimates at gene level to use with deseq2. In the paired samples, the treatment is overxperssion ...
deseq2 written 3 months ago by Puks10 • updated 3 months ago by Michael Love25k

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