User: sgblackpearl

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Posts by sgblackpearl

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Comment: A: Creating design matrix in LIMMA
... Thanks Gordon and Ryan for your valuable inputs. I have another set of experiments which is pretty much similar to that of the above one. There also I have two different stressors, and similar dye swap but the reference RNA is same for all the arrays (essentially 'pool1' and 'pool2' from the above ...
written 2.5 years ago by sgblackpearl0
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Comment: C: Creating design matrix in LIMMA
... Yes, pool1 & 2  are all the samples pooled from all the time points for the respective stressors. The subjects used for all the time points both stressors are same. ...
written 2.5 years ago by sgblackpearl0
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Creating design matrix in LIMMA
... Hi everyone, I am stuck with creating design matrix in LIMMA for my microarray experimental design. The experiment consists of 40 Agilent arrays. The subjects were treated with two stress conditions (S1 and S2). In each stress condition, the subjects were sampled in 5 timepoints (0, 6, 12, 24 and 48 ...
microarray limma R written 2.5 years ago by sgblackpearl0

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