User: tombernardryan

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Posts by tombernardryan

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Q value obtained from QValue package is lower than P value?
... Hi all, I'm wondering if someone could put me on the right path to using the "qvalue" package correctly. I have an actual P value of 0.05.  I have a list of 1,000 randomised p values: range of these randomised p values is 0.002 to 0.795, average of the randomised p values is 0.399 and the median of ...
qvalue R multiple comparisons pvalue written 2.6 years ago by tombernardryan30 • updated 2.6 years ago by Storey, John D.60
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DESeq2: Is it possible to convert read counts to expression values via TPM and return these values?
...   Dear all, I am so confused, I would really appreciate help.  I have a table of read counts from RNASeq data (i.e. just a table, where each column is a sample, and each row is a gene, and the cells are read counts that range from 0 to say 10,000). I want to convert these to TPM values and output ...
deseq2 R written 2.6 years ago by tombernardryan30 • updated 2.6 years ago by Michael Love24k

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