User: ed_isfahani

gravatar for ed_isfahani
Reputation:
0
Status:
New User
Location:
Last seen:
3 months, 4 weeks ago
Joined:
10 months, 1 week ago
Email:
e**********@yahoo.com

Posts by ed_isfahani

<prev • 7 results • page 1 of 1 • next >
0
votes
0
answers
90
views
0
answers
up-regulated and down-regulated genes in metaRNAseq
... Hello how  can I determine up-regulated and down-regulated genes in result of  metaRNAseq? ...
metarnaseq written 4 months ago by ed_isfahani0
1
vote
1
answer
114
views
1
answer
function meaning(on.index <- which(filter$on == 1))
... Hi, what is the meaning of this function " on.index <- which(filter$on == 1)"? it is a part of metaRNAseq for filter data: ## Filter using Jaccard index for each study filter <- HTSFilter(cds, plot=FALSE) + cds.filter <- filter$filteredData + on.index <- which(filter$on == 1) + cat(" ...
htsfilter metarnaseq jaccard index written 4 months ago by ed_isfahani0 • updated 4 months ago by andrea.rau50
0
votes
1
answer
141
views
1
answer
name of column in R
... Hi, I want to import data to R with the columns name of these: #ID  study1cond1  study1cond1  study1con2  study1con2  study2con1  study2con1  study2con1 #A        430                30                     0                    76                 45                 120            230 #B         34 ...
deseq htsfilter software error columns metarnaseq written 4 months ago by ed_isfahani0 • updated 4 months ago by Wolfgang Huber13k
2
votes
1
answer
80
views
1
answer
how do meta-analysis with Na p-value of DESeq2 ?
... Hi all, I want to do meta-analysis with p-value of DESeq2,as you know there are some NA value for p-value in each experiment. what should I do with them,I can not remove them in each experiment because for meta-analysis I should have value for all of genes. can I use 1 instead of NA or not? if no, ...
deseq2 meta-analysis metaseq written 4 months ago by ed_isfahani0 • updated 4 months ago by Michael Love15k
0
votes
1
answers
153
views
1
answers
Comment: C: pvalue of deseq2
... thank you very much,I thought the normalization use for meta-analysis while it is used for NOIseq. do you know I can use  DESeq2 instead of  DESeq? as I said In the package it is mentioned DESeq or edgeR. ...
written 4 months ago by ed_isfahani0
0
votes
1
answers
153
views
1
answers
Comment: C: pvalue of deseq2
... actually I have 5 experiment of RNAseq data. I want to do meta-analysis by metaseq package. this packag have two method for doing meta-analysis,one work by expression value which calculate noiseq and another work by p-value of deseq or edgeR. when we work with noiseq method, in its function we can ...
written 4 months ago by ed_isfahani0
5
votes
1
answer
153
views
1
answer
pvalue of deseq2
... hello all, I want to use p-value of DESeq2 for meta-analysis,I want to know p-value of DESeq2 are normalize?if yes which method DESeq2 use for normalize?  I appreciate your help ...
normalization deseq2 p-value metaseq written 4 months ago by ed_isfahani0 • updated 4 months ago by Ryan C. Thompson6.1k

Latest awards to ed_isfahani

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 123 users visited in the last hour