User: bijaya.malla

gravatar for bijaya.malla
Reputation:
0
Status:
New User
Location:
Last seen:
2 days ago
Joined:
10 months, 1 week ago
Email:
b***********@outlook.com

Posts by bijaya.malla

<prev • 6 results • page 1 of 1 • next >
0
votes
3
answers
472
views
3
answers
Answer: A: Choosing a threshold for minimum counts in RNAseq
... Hi Ryan, your website is really informative. However, it is not clear how to choose CPM value  ...
written 8 days ago by bijaya.malla0
0
votes
1
answer
74
views
1
answer
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, ?
... I used following command to filter out 3 groups (NC, BF, CF) out of 5 groups while remaining two groups are "AF" and "DF". design_NCaF <- filter(design, Groups1!="NC",Groups1!="BF",Groups1!="CF") However, at following command NCaF <- DESeqDataSetFromMatrix(data_max_woNCaF, colData=design_NC ...
genefilter deseq2 filter written 21 days ago by bijaya.malla0 • updated 1 day ago by Michael Love15k
0
votes
1
answers
162
views
1
answers
Comment: C: DGEList error ?
... Definitely, in this era, everyone google or try to find answer oneself. I did check the data by different ways I saved the file as tab delimited format (txt) and run command > sapply(file.txt, class)         X    B2_015    B2_016    B2_017   B2F_015   B2F_016   B2F_017    B3_003  "factor" "inte ...
written 5 weeks ago by bijaya.malla0
0
votes
1
answers
162
views
1
answers
Comment: C: DGEList error ?
... It is better to provide answer rather than just to comment. Now I am getting another error "Error in colSums(counts): "x" must be numeric" @James W. MacDonald   ...
written 5 weeks ago by bijaya.malla0
2
votes
1
answer
162
views
1
answer
DGEList error ?
... I imported a data as follows which has first column as genes name and other 21 columns for samples with respective counts for genes using >d=read.csv("path/xyz.csv", as.is=T) THEN, define group using c function >group=c("control", "test", "n") >library(edgeR) >dge=DGEList(d,group=gro ...
data import written 5 weeks ago by bijaya.malla0 • updated 5 weeks ago by James W. MacDonald45k
1
vote
1
answer
191
views
1
answer
RNA-seq workflow at the gene level - "colSums(assay(se))" command ?
... Can someone explain me where the numbers, especially the one after "colSums(assay(se))" comes from ? e.g. SRR1039513_subset.bam ## 6478 Thanks head(assay(se), 3) ## SRR1039508_subset.bam SRR1039509_subset.bam SRR1039512_subset.bam ## ENSG00000009724 38 ...
rnaseq summarized experiment written 10 months ago by bijaya.malla0 • updated 10 months ago by Michael Love15k

Latest awards to bijaya.malla

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 276 users visited in the last hour