User: arielle

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arielle0
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Posts by arielle

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Answer: A: SRAdb: Error downloading sqlite files
... It seems that the getSRAdbFile() function does not worked for me. This solved the problem: system("wget https://s3.amazonaws.com/starbuck1/sradb/SRAmetadb.sqlite.gz") system("gunzip SRAmetadb.sqlite.gz") sqlfile <- 'SRAmetadb.sqlite' ...
written 20 days ago by arielle0
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SRAdb: Error downloading sqlite files
...   I have successfully installed the SRAdb package. I am now trying to download and uncompress the files, sqlfile <- 'SRAmetadb.sqlite' if(!file.exists('SRAmetadb.sqlite')) sqlfile <<- getSRAdbFile() But I get the following error: downloaded 0 bytes Error in download.file(url_sra, d ...
sradb written 22 days ago by arielle0
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DESeq: How are condition A and B assigned
... I am using DESeq to perform differential expression analysis. I have read and followed the instructions in the user manuals. I am calling differential expression, using this type of command:  res = nbinomTest( cds, "untreated", "treated" ). I am assuming that untreated will be assigned as condition ...
deseq R written 10 months ago by arielle0

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