User: beachboarder900

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Posts by beachboarder900

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topGO - Extra terms appearing in main analysis and the enrichment test
... Hello, I am using a fairly straight-forward analysis: GOdata <- new("topGOdata",               description = "Simple session",               ontology = "BP",                  allGenes = top.vec,               nodeSize = 5,                    annot = annFUN.GO2genes,               GO2genes = g ...
go topgo gene ontology written 7 months ago by beachboarder90040
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Answer: A: topGO under-representation table
... After some trial and error, I've found a solution to my own question! For anyone interested, use the code above to create the GO under represented function, you can then use under.GO <- GenTable(GOdata, Fis = resFisher.weight, topNodes = 150, numChar=100) to get a table similar to the enrichme ...
written 15 months ago by beachboarder90040
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topGO under-representation table
... Greetings, I have found Adrian's previous answers (here) to performing the under-representation test using the code below. The function works great for identifying the under represented GO terms, but I would like to get a table in a similar fashion to the GenTable() function within the topGO packag ...
go topgo written 16 months ago by beachboarder90040

Latest awards to beachboarder900

Teacher 15 months ago, created an answer with at least 3 up-votes. For A: topGO under-representation table
Scholar 15 months ago, created an answer that has been accepted. For A: topGO under-representation table

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