User: beachboarder900

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Posts by beachboarder900

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topGO - Extra terms appearing in main analysis and the enrichment test
... Hello, I am using a fairly straight-forward analysis: GOdata <- new("topGOdata",               description = "Simple session",               ontology = "BP",                  allGenes = top.vec,               nodeSize = 5,                    annot = annFUN.GO2genes,               GO2genes = g ...
go topgo gene ontology written 8 days ago by beachboarder90040
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Answer: A: topGO under-representation table
... After some trial and error, I've found a solution to my own question! For anyone interested, use the code above to create the GO under represented function, you can then use under.GO <- GenTable(GOdata, Fis = resFisher.weight, topNodes = 150, numChar=100) to get a table similar to the enrichme ...
written 8 months ago by beachboarder90040
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topGO under-representation table
... Greetings, I have found Adrian's previous answers (here) to performing the under-representation test using the code below. The function works great for identifying the under represented GO terms, but I would like to get a table in a similar fashion to the GenTable() function within the topGO packag ...
go topgo written 9 months ago by beachboarder90040

Latest awards to beachboarder900

Scholar 8 months ago, created an answer that has been accepted. For A: topGO under-representation table

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