User: beachboarder900

Reputation:
40
Status:
New User
Location:
Last seen:
1 year ago
Joined:
1 year, 10 months ago
Email:
b**************@sbcglobal.net

Posts by beachboarder900

<prev • 3 results • page 1 of 1 • next >
0
votes
0
answers
281
views
0
answers
topGO - Extra terms appearing in main analysis and the enrichment test
... Hello, I am using a fairly straight-forward analysis: GOdata <- new("topGOdata",               description = "Simple session",               ontology = "BP",                  allGenes = top.vec,               nodeSize = 5,                    annot = annFUN.GO2genes,               GO2genes = g ...
go topgo gene ontology written 13 months ago by beachboarder90040
0
votes
1
answers
496
views
1
answers
Answer: A: topGO under-representation table
... After some trial and error, I've found a solution to my own question! For anyone interested, use the code above to create the GO under represented function, you can then use under.GO <- GenTable(GOdata, Fis = resFisher.weight, topNodes = 150, numChar=100) to get a table similar to the enrichme ...
written 21 months ago by beachboarder90040
5
votes
1
answer
496
views
1
answer
topGO under-representation table
... Greetings, I have found Adrian's previous answers (here) to performing the under-representation test using the code below. The function works great for identifying the under represented GO terms, but I would like to get a table in a similar fashion to the GenTable() function within the topGO packag ...
go topgo written 22 months ago by beachboarder90040

Latest awards to beachboarder900

Teacher 21 months ago, created an answer with at least 3 up-votes. For A: topGO under-representation table
Scholar 21 months ago, created an answer that has been accepted. For A: topGO under-representation table

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 241 users visited in the last hour