User: snj

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snj0
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Posts by snj

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[oligo] Farms and DFW summalization of Affymetrix Clariom S array using oligo package
... Dear all,   I am trying to analyze Affymetrix Clariom S array using R. I have done RMA normalization with oligo package. However, I cannot perform another normalization method such as farms (qfarms) and dfw with oligo.   I found the related post about Affymetrix hugene2.0st arrays (https://sup ...
oligo farms written 2.2 years ago by snj0
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Comment: C: [xps]Analysis of Affymetrix Clarion S array using xps package
... Thank you, Christian. I understood the situation.   I have tried to constuct transctipt.csv and probeset.csv from the NetAffx's annotation files. Some differences were modificated, but NetAffx's transcript annotation file does not contain AFFX control information. Such information is included i ...
written 2.2 years ago by snj0
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[xps]Analysis of Affymetrix Clarion S array using xps package
... Hi all,   I would like to analyze the data obtained with Affymetrix's new Clariom S arrays using xps package. Now, I am trying to make a scheme file for Clarion S Mouse array using import.exon.scheme(). However, it simply does not work because Affymetrix has changed the format of transcript and ...
xps written 2.3 years ago by snj0 • updated 2.3 years ago by cstrato3.9k
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Comment: C: [XPS]Installation of xps package in macOS Sierra
... Thank you very much, Christian! I have successfully installed ROOT and xps on my Sierra machine.   ...
written 2.3 years ago by snj0
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Comment: C: [XPS]Installation of ups package in macOS Sierra
... I have done clean install of macOS and updated to macOS Sierra. I have installed Xcode (command line), xquartz, then homebrewed root (v5) and r (v3.3.2). I tried again to install xps (biocLite("xps")), but the same error messages came... ...
written 2.3 years ago by snj0
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Answer: A: [XPS]Installation of ups package in macOS Sierra
... Thank you, zqzneptune. I have already tried to install biocLite binary version. I tried the procedure again, but could not install it with the same error massages.   Error in dyn.load(file, DLLpath = DLLpath, ...) :    unable to load shared object '/usr/local/lib/R/3.3/site-library/xps/libs/xps ...
written 2.3 years ago by snj0
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[XPS]Installation of xps package in macOS Sierra
... Hi all,   I have been trying to install xps package in my PC (macOS Sierra 10.12.3). I have tried many ways in references to the posts in this support and the web sites. But, I can not install xps successfully. 1. System Integrity Protection was disabled. 2. ROOT (v5.34.36_2) was installed usi ...
xps package installation written 2.3 years ago by snj0 • updated 2.3 years ago by Martin Morgan ♦♦ 23k

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