User: hkang

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hkang0
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Posts by hkang

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Normalization and DE test in EBseq and DESeq
... Hi In normalization method, geometric mean is obtained across the all samples regardless of control and experimental group, and then each data is divided by the geometric mean. 1. I really want to know what "data/geometric mean" means. 2. Why is geometric mean (not other values like arithmetic me ...
geometric mean library size factor written 2.8 years ago by hkang0
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Negative bionomial model (test) vs T test in EBseq or DEseq2
... Hi I'm wondering if T test can be used for differentiation expression analysis with RNAseq data, and which one is better for DE analysis, T test or negative binomial model (test /  distribution), and why? Thanks, HyunJun ...
negative binomial model written 2.8 years ago by hkang0

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