User: hwu12

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hwu1210
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Posts by hwu12

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Extract isoform-specific ranges
... Thanks! I uploaded an image to issue #439 from the two browsers to show the problem. Hopefully, they can fix it soon. In any case, I will use the Firefox to vote in the future.  ...
written 11 weeks ago by hwu1210
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Comment: C: Extract isoform-specific ranges
... The problem is in my Safari browser. I cannot/never see the green circle there. I switched to Firefox and can see it now. Thanks again. ...
written 11 weeks ago by hwu1210
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Comment: C: Extract isoform-specific ranges
... Malcolm, how can I accept your answer? I want to do it but I cannot find a way to do it. It is not similar to StackOverflow. Sorry I did not see your reply until now. Please let me know and I will accept your answer. Thanks again! ...
written 11 weeks ago by hwu1210
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Comment: C: Extract isoform-specific ranges
...  Malcolm Cook, thank you so much for the complete example. Michael Lawrence, thanks for your help, too. I really appreciate it. ...
written 12 weeks ago by hwu1210
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Comment: C: Extract isoform-specific ranges
... Thanks, Michael. I am actually looking for a way to isolate isoform-specific ranges (e.g. for the isoform 1 in the example, the bases from 4 to 6 are unique for the isoform 1 because it is spliced out in other 2 isoforms and does not exist in the final transcript. The [11:15] range for isoform 3 is ...
written 3 months ago by hwu1210
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Extract isoform-specific ranges
... Hi, is there a way to identify/extract the isoform-specific ranges for multiple isoforms? For example:  GeneA.1 with 1 ranges [1,10] GeneA.2 with two ranges [1,3][8:10] GeneA.3 with two ranges [1,3][7:15] I want: The range specific for GeneA.1 is [4:6] The range specific for GeneA.2 is none T ...
genomicranges bioconductor written 3 months ago by hwu1210 • updated 3 months ago by Malcolm Cook1.4k
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Generate START and STOP ranges from a gff file
... Hi, I am using the new tomato ITAG3.0 annotation, but the gff file does not contain the rows for the start and stop codon positions. It only contains ranges for "gene", "transcript", "cds", "exon" and "3' UTR" and "5' UTR". Is there a way to fix that? In other words, is there a way to generate a gf ...
annotation gff bioconductor written 9 months ago by hwu1210

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