User: KRA

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KRA0
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Posts by KRA

<prev • 10 results • page 1 of 1 • next >
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Comment: C: Batch correction for two conditions two batches
... Thanks swbarnes !! I was thinking the same but wanted to confirm before I conclude on it. ...
written 11 weeks ago by KRA0
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Batch correction for two conditions two batches
... Hello, If I have two conditions, which were sequenced as two different runs, is there a way to normalize the data before running DESeq2? For example: I have 8 samples 4 each of one condition age1, batch1 age1, batch1 age1, batch1 age1, batch1 age2, batch2 age2, batch2 age2, batch2 age2, batch2 Is ...
deseq2 written 11 weeks ago by KRA0 • updated 11 weeks ago by swbarnes2310
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Comment: C: DESeq2 DEG analysis 99% overlap among LRT and specific contrasts time course no
... Thank you Mike !! ...
written 12 months ago by KRA0
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Comment: C: DESeq2 DEG analysis 99% overlap among LRT and specific contrasts time course no
... Thank you Mike,  One last question for time series analysis, what are the disadvantages if I do not have a matched time point control and how can I address it if I won't be able to redo the experiment.  ...
written 12 months ago by KRA0
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Comment: C: DESeq2 DEG analysis 99% overlap among LRT and specific contrasts time course no
... Its strikingly similar , shown below https://ibb.co/c7Anje   ...
written 12 months ago by KRA0
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Comment: C: DESeq2 DEG analysis 99% overlap among LRT and specific contrasts time course no
... Yes Mike, here is the link https://ibb.co/fTVEVK It showed that major variance was due to LPS, however, the samples are also separated among the time points.  ...
written 12 months ago by KRA0
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DESeq2 DEG analysis 99% overlap among LRT and specific contrasts time course no matching time point controls
... Hello community, I have a mice RNASeq time course experiment with RNASeq samples at time points day0,day2,day4,day6. On day0 no treatement(lps) was given to control group(4 mice) and target celltype from all 4 mice was sequenced (bulk RNASeq). 3 groups were subjected to treatment and same target ce ...
deseq2 mikelove written 12 months ago by KRA0 • updated 12 months ago by Michael Love25k
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Comment: C: biocLite updating problem with Ubuntu 17.10
... Hello James, I tried to downgrade as per `biocValid()` instructions, but it will still giving me the errors. ...
written 21 months ago by KRA0
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Comment: C: biocLite updating problem with Ubuntu 17.10
... Thank You Martin !! I have upgraded to 3.4.3 and it fixed the problem. ...
written 21 months ago by KRA0
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biocLite updating problem with Ubuntu 17.10
... Hello, I am trying to use biocLite to get few packages, but I am unable to use biocLite(). I have tried removing and installing BiocGenerics and also tried  root instaling biocgenerics using  sudo apt-get install r-bioc-biocgenerics.Even then, I was unable to update the packages. After using  ...
annotationdbi iranges biocgenerics s4vectors ubuntu written 21 months ago by KRA0 • updated 21 months ago by Martin Morgan ♦♦ 23k

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Popular Question 11 months ago, created a question with more than 1,000 views. For biocLite updating problem with Ubuntu 17.10

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