User: spollack

gravatar for spollack
spollack0
Reputation:
0
Status:
New User
Last seen:
11 months, 2 weeks ago
Joined:
2 years, 8 months ago
Email:
s*******@jimmy.harvard.edu

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by spollack

<prev • 10 results • page 1 of 1 • next >
0
votes
1
answer
276
views
1
answers
Comment: C: Can't push upstream - duplicate commits
... OK, thanks, I'll look at it. ...
written 11 months ago by spollack0
0
votes
1
answer
276
views
1
answers
Comment: C: Can't push upstream - duplicate commits
... If it really bugs you, you could try not reading it. ...
written 11 months ago by spollack0
4
votes
1
answer
276
views
1
answer
Can't push upstream - duplicate commits
... Dear Bioconductor, I am trying to fix the error that our package bumphunter is producing. The error is due to a data file that is used in the tests which was moved and has a new URL. But when I try to push to upstream, I get an error about duplicate commits. I did this: (i) followed the instruction ...
git written 11 months ago by spollack0 • updated 11 months ago by Mike Smith4.0k
0
votes
1
answer
481
views
1
answers
Comment: C: Problem with IRanges and GenomicRanges
... Aha, now I get it. These aren't points on the real line; they're segments.  |--1--|--2--|--3--|--4--|--5--|--6--| So |--2--|--3--| is adjacent to |--4--|--5--|   ...
written 2.1 years ago by spollack0
0
votes
1
answer
481
views
1
answers
Comment: C: Problem with IRanges and GenomicRanges
... Confused. How can the distance between [4,5] and [2,3] be zero? The documentation for nearest-methods {IRanges} says: x and y overlap => distance(x, y) == 0 or x and y overlap or are adjacent <=> distance(x, y) == 0  [4,5] and [2,3] do not overlap and they are not adjacent. Wh ...
written 2.1 years ago by spollack0
0
votes
1
answer
481
views
1
answer
Problem with IRanges and GenomicRanges
... Dear Bioconductor, I think it is possible that recent modifications to IRanges and GenomicRanges broke our bumphunter package. bumphunter does a very simple test that amounts to this: R> x <- data.frame(start = c(2, 4, 7, 10, 13, 17, 19, 22, 24), end = c(3, 5, 9, 12, 16, 18, 20, 23, 26), c ...
iranges genomicranges written 2.1 years ago by spollack0 • updated 2.1 years ago by Hervé Pagès ♦♦ 14k
0
votes
2
answers
763
views
2
answers
Comment: C: Using AMI with StarCluster - error authenticating
... OK, thanks, good idea (Bioconductor Docker), I'll try that.  - S ...
written 2.6 years ago by spollack0
0
votes
2
answers
763
views
2
answers
Comment: C: Using AMI with StarCluster - error authenticating
... Thanks for the advice. I tried to build a cluster with CfnCluster and the Bioconductor AMI but I never did get it to work. My best attempt was a config file with this: master_instance_type = t2.large slave_instance_type = t2.large master_root_volume_size = 500 slave_root_volume_size = 500 base_os = ...
written 2.6 years ago by spollack0
0
votes
2
answers
763
views
2
answers
Comment: C: Using AMI with StarCluster - error authenticating
... Sorry, just saw this. I got the AMI to work with the latest StarCluster version 0.95.6 yesterday. But now I have a problem with connecting to Rstudio Server. I can connect to rstudio server on a slave node just fine, but I can't connect to it on the master node. On the master node, I get the login ...
written 2.6 years ago by spollack0
0
votes
2
answers
763
views
2
answers
Using AMI with StarCluster - error authenticating
... Dear Bioconductor, I am attempting to follow the instructions here https://www.bioconductor.org/help/bioconductor-cloud-ami/#configuring_starcluster to configure a StarCluster for running the Bioconductor AMI as a cluster. But I am getting an error when I try to start a cluster. The error is a Pyt ...
ami written 2.7 years ago by spollack0 • updated 2.7 years ago by Dan Tenenbaum8.2k

Latest awards to spollack

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 139 users visited in the last hour