User: Mustafa ABUELQUMSAN

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France/Marseille
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Posts by Mustafa ABUELQUMSAN

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Getting pheno tables from recount datasets without any NA values in characteristics and geo_accession fields and also without duplicated row.names
... Dear sir’s Bioconductor developers, I have intrinsic question about the recount repository “datasets” I work to make advanced statistics analysis for the most of the recount dataset, we noticed that the most of pheno tables in recount have the NA values for the characteristics and geo_accession fi ...
summarizedexperiment recount written 11 days ago by Mustafa ABUELQUMSAN0 • updated 8 days ago by Leonardo Collado Torres540
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Accessing the BigWig files from the web
... Dear  Developer team of Bioconductor, Indeed i have a bit annoying problematic through i tried to download BigWig files from the web, where here i stated my code and what is results from my running such code. > library('rtracklayer') > x <- import.bw('http://duffel.rail.bio/recount/DRP00 ...
rtracklayer written 8 months ago by Mustafa ABUELQUMSAN0
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Comment: C: Error through importing (project = 'SRP009615') or even to download any BigWig F
... Hi Leonardo, I tried  to download that specified file which is you tell me to download it from the link  http://duffel.rail.bio/recount/DRP000366/bw/DRR000897.bw But also when i attempt read that file locally from my computer i faced furthermore it another error message which is  getwd() list.f ...
written 8 months ago by Mustafa ABUELQUMSAN0
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Comment: C: Error through importing (project = 'SRP009615') or even to download any BigWig F
... Hi Leonardo, I really appreciated your efforts in order to i finally arrived to the good solution. but when i run your last code which is   https://gist.github.com/elqumsan/3bef4a49c5864b298820361a93c5b122 Thanks a lot Leonardo. Best. Mustafa ...
written 8 months ago by Mustafa ABUELQUMSAN0
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Comment: C: Error through importing (project = 'SRP009615') or even to download any BigWig F
... Hi Leonardo, unlimited thanks for yours instruction to put my session information here, Because of it have a bit annoying limit.  https://gist.github.com/elqumsan/a03e5f207774abca772b6bec2138a604 Best. Mustafa. ...
written 8 months ago by Mustafa ABUELQUMSAN0
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Comment: C: Error through importing (project = 'SRP009615') or even to download any BigWig F
... Hi Leonardo, This is my configuration for openssl. root@Dell-CG1XF82:~# openssl version OpenSSL 1.0.2g  1 Mar 2016 root@Dell-CG1XF82:~# pkg-config --version 0.29.1 root@Dell-CG1XF82:~# Best, Mustafa. ...
written 8 months ago by Mustafa ABUELQUMSAN0
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Comment: C: Error through importing (project = 'SRP009615') or even to download any BigWig F
... <script src="https://gist.github.com/elqumsan/a03e5f207774abca772b6bec2138a604.js"></script> ...
written 8 months ago by Mustafa ABUELQUMSAN0
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Error through importing (project = 'SRP009615') or even to download any BigWig File
... Hi Leonardo, I thank you about your guidances. But i still have problematic through import BigWig file or any Project as  project = 'SRP009615'. Despite that i check the version of "rtracelayer" that is (1.34.2 for bioc-release), furthermore i have been tried to apply all commands which is (bioc-d ...
tutorial recount written 8 months ago by Mustafa ABUELQUMSAN0 • updated 8 months ago by Leonardo Collado Torres540

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