User: tootiki

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tootiki0
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Posts by tootiki

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Comment: C: standard error value (lfcSE) returned by DeSeq2
... great! thanks very much. ...
written 18 months ago by tootiki0
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Comment: C: GoSeq SupportedGenomes error
... OK. firstly thanks again, your help is appreciated.   I’m new to all this, and don’t know as much as you. there's a lot to get one's head around!   to my limited understanding, nothing i wrote in my last comment (wrong as it may well be) contradicts what was written in either previous comment, both ...
written 18 months ago by tootiki0
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Comment: C: GoSeq SupportedGenomes error
... thanks, both.  useful answers. can you tell i'm an R beginner? bashing around a bit, i think the problem is that R has been updated to a version not supported by bioconductor.  this meant that BiocInstaller was struggling, and while it looked (to my uneducated eye) as if it was managing to update p ...
written 18 months ago by tootiki0
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standard error value (lfcSE) returned by DeSeq2
... Can you help me to understand the standard error value (lfcSE) returned by DeSeq2. Is that value also a log2 of the standard error?  So for example, a gene with a log2fc of -2.3 and a lfcSE of 0.12, the actual fold change will be 0.2, but what will the equivalent standard error be? ...
deseq deseq2 standard error lfc lfcse written 18 months ago by tootiki0 • updated 17 months ago by rraadd_80
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GoSeq SupportedGenomes error
... Following the instructions on https://bioconductor.org/packages/devel/bioc/vignettes/goseq/inst/doc/goseq.pdf To see what genomes are in the local database, I am told to type: supportedOrganisms() ...which returns: Error: could not find function "supportedOrganisms"   googling around, I find t ...
goseq error unsupported organisms supportedgenomes supportedorganisms written 18 months ago by tootiki0 • updated 18 months ago by Gordon Smyth35k

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Popular Question 18 months ago, created a question with more than 1,000 views. For standard error value (lfcSE) returned by DeSeq2

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