User: tootiki

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tootiki0
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Posts by tootiki

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Comment: C: standard error value (lfcSE) returned by DeSeq2
... great! thanks very much. ...
written 8 months ago by tootiki0
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Comment: C: GoSeq SupportedGenomes error
... OK. firstly thanks again, your help is appreciated.   I’m new to all this, and don’t know as much as you. there's a lot to get one's head around!   to my limited understanding, nothing i wrote in my last comment (wrong as it may well be) contradicts what was written in either previous comment, both ...
written 8 months ago by tootiki0
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Comment: C: GoSeq SupportedGenomes error
... thanks, both.  useful answers. can you tell i'm an R beginner? bashing around a bit, i think the problem is that R has been updated to a version not supported by bioconductor.  this meant that BiocInstaller was struggling, and while it looked (to my uneducated eye) as if it was managing to update p ...
written 8 months ago by tootiki0
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standard error value (lfcSE) returned by DeSeq2
... Can you help me to understand the standard error value (lfcSE) returned by DeSeq2. Is that value also a log2 of the standard error?  So for example, a gene with a log2fc of -2.3 and a lfcSE of 0.12, the actual fold change will be 0.2, but what will the equivalent standard error be? ...
deseq deseq2 standard error lfc lfcse written 8 months ago by tootiki0 • updated 7 months ago by rraadd_80
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GoSeq SupportedGenomes error
... Following the instructions on https://bioconductor.org/packages/devel/bioc/vignettes/goseq/inst/doc/goseq.pdf To see what genomes are in the local database, I am told to type: supportedOrganisms() ...which returns: Error: could not find function "supportedOrganisms"   googling around, I find t ...
goseq error unsupported organisms supportedgenomes supportedorganisms written 8 months ago by tootiki0 • updated 8 months ago by Gordon Smyth32k

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