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User: bag59

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bag590
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Posts by bag59

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WGCNA crashes R on OSX
... I’m an R user with MacOSX Sierra (v10.12.3) and I am encountering R (v3.3.3) crash problems loading a specific Bioconductor package: WGCNA. I'm hoping someone here might have encountered/fixed the same issue somehow . . . Basically the package installs fine, but loading the library causes immediate ...
wgcna hclust written 22 months ago by bag590
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Comment: C: Can one get LSMeans and expression confidence intervals from limma and voom?
... Excellent! Thanks Aaron!! This worked perfectly, although it took me a few tries to get the correct design matrix for the output I wanted. I had to be sure and use the group-means parameterization from the User Guide. I didn't know the "logFC" output corresponds to the level means when there is only ...
written 24 months ago by bag590
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Can one get LSMeans and expression confidence intervals from limma and voom?
... Hello, I am processing transcriptome-wide expression data using the limma pipeline. I have a two factor experiment (2 treatments crossed). My data are standardized with voom, precision weights are calculated with eBayes, and analysis of differential expression is done though limma modeling. Does a ...
limma voom ebayes written 24 months ago by bag590

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