User: br

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br0
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Posts by br

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Comment: C: Error with dmrfinder bsseq after combining Bsseq obj
... I found the answer myself, I have to change the statistics settings as I set local.correct = FALSE before. I did this choice as I read somewhere this might be better for RRBS data.  dmrs0 <- dmrFinder(obj.tstat, cutoff = c(-4.6, 4.6),stat = "tstat") Thanks anyways! :)     ...
written 21 months ago by br0
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Error with dmrfinder bsseq after combining Bsseq obj
... Dear all, I have a problem occurring using the command dmrfinder > dmrs0 <- dmrFinder(bsseqbismark_smooth_chrI_location3_5_tstat, cutoff = c(-4.6, 4.6)) Error in dmrFinder(bsseqbismark_smooth_chrI_location3_5_tstat, cutoff = c(-4.6, : 'stat' needs to be a column of 'bstat@stats' I checked the ...
combine delayedarray bsseq r package dmrfinder written 21 months ago by br0
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Comment: C: Error using Gviz and BiomartGeneRegionTrack, version problem?
... Hey Florian, Thanks a lot, that spelling thing is what I thought was making the problem. Great that you are going to update the Gviz package. Yes I also managed to create a biomartgeneregiontrack in your proposed way before, but there is an issue if I mix several tracks - is it possible to replace ...
written 2.1 years ago by br0
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Error using Gviz and BiomartGeneRegionTrack, version problem?
... Dear all, Dear Florian I am learning bioconductor recently using the Gviz-package and biomart in order to load a BiomartGeneRegionTrack to my stickleback genome. I encountered a small problem as it is reporting an error.   First step- ​Question here, is this a database problem? Or am I missing s ...
biomart ucsctrack plottracks gviz-package stickleback written 2.1 years ago by br0 • updated 2.1 years ago by florian.hahne@novartis.com1.6k

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