User: michael.steffen

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Posts by michael.steffen

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Comment: C: How are feasible genes determined in topGO
... I feel like your response was unnecessarily hostile. I am not sure how I told you that you were wrong. You asked me to clarify something, and I responded with trying to better help you understand what I meant........ But besides that, your last sentence did inadvertently lead me to the answer I was ...
written 5 weeks ago by michael.steffen0
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understanding topGO enrichment
... I am trying to understand how topGO decides a GO term is enriched. Specifically, I am trying to understand how terms not in my list (universal or my genes of interested with annotated GO terms) can be considered significant.  Like the example below. That GO ID is not in any of my lists, so how is i ...
topgo written 5 weeks ago by michael.steffen0
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Comment: C: How are feasible genes determined in topGO
... By real GOs, I mean these Gene IDs do have GO terms associated with them. If even shows them when running the code. The problem is, topGO is telling me these genes aren't useable, but I can not figure out why.  ...
written 5 weeks ago by michael.steffen0
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Comment: C: How are feasible genes determined in topGO
... But why can they not be annotated to the GO? These are real GOs. This is more of what I have been finding to try and answer this question, I understand what its doing, but not why or how it is doing it.  ...
written 6 weeks ago by michael.steffen0
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How are feasible genes determined in topGO
... How are feasible genes selected in topGO. I can't seem to find any information on this? Many genes that are non considered feasible seem no different that any other genes and their GO annotation?    Thanks, Mike  ...
topgo written 7 weeks ago by michael.steffen0 • updated 7 weeks ago by James W. MacDonald43k

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