User: jamie.gearing

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Posts by jamie.gearing

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Comment: C: Limma filtering based on treatment group
... Very good. Thanks Steve. ...
written 11 days ago by jamie.gearing0
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Limma filtering based on treatment group
... Hello, I have a question about filtering lowly expressed probes (or genes) when using limma. For the example in section 17.4 of the limma user's guide, probes are called expressed if they exceed a cut-off in more than a given number of samples (equal to the size of the smallest treatment group): i ...
limma filtering written 11 days ago by jamie.gearing0 • updated 11 days ago by Steve Lianoglou12k
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Comment: C: chipenrich mm10 error
... Thanks very much for such a fast response! This package is just what I need, so I am very grateful. ...
written 11 weeks ago by jamie.gearing0
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chipenrich mm10 error
... I have encountered an error while trying to use the chipenrich package with the mm10 genome. Here is a small example: library(chipenrich) peaks <- data(peaks_E2F4, package = 'chipenrich.data') results <- chipenrich(head(peaks), out_name=NULL, genome = "mm10", genesets = c("GOBP", "GOCC", "GO ...
chipenrich written 11 weeks ago by jamie.gearing0 • updated 11 weeks ago by rcavalca30

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