User: kapeelc

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kapeelc0
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Posts by kapeelc

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Answer: A: Ballgown up and down regulated genes
... Hi, I am having similar issue with regard to p-value and q-value distribution. I am doing a pariwise comparison. I do not see any genes differentially expression for q value < 0.05. I ran the same comparison using DESeq2 and Cuffdiff I see 1865(padj < 0.05) and 1429(q < 0.05) respectively. ...
written 2.4 years ago by kapeelc0
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Comment: C: Results with very few genes with qval <0.05
... Attached are the distribution of pvalues  and qvalues for genes ...
written 2.4 years ago by kapeelc0
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Answer: A: Results with very few genes with qval <0.05
... I have the same issue too. Does it have to do with more stringent value set for FDR? I get comparable results when the FDR is set <0.001 in cudiff. How one sets the FDR in Ballgown? ...
written 2.5 years ago by kapeelc0

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