User: cajawe

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cajawe0
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Posts by cajawe

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Comment: C: [DESeq2] Automatic outlier detection and replacement with continuous variables
... Okay, great—thanks kindly for your help! ...
written 2.7 years ago by cajawe0
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Comment: A: [DESeq2] Automatic outlier detection and replacement with continuous variables
... The covariate is a disease phenotype: the proportion of afflicted individuals per inbred strain, with each RNAseq sample corresponding to a strain.  Many samples are zero—in light of your comment, I suppose that this may be the source of the problem.  I've pasted the covariate below (after a log(x+c ...
written 2.7 years ago by cajawe0 • updated 2.7 years ago by Michael Love26k
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[DESeq2] Automatic outlier detection and replacement with continuous variables
... Hello, I am running DESeq2_1.10.1 on a data set with a continuous predictor term (either with or without a categorical blocking term).   My understanding is that in such cases, outlier detection and replacement is not automatically applied, and instead it's necessary to conduct a manual inspection ...
rnaseq deseq2 differential gene expression outliers written 2.7 years ago by cajawe0

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