User: trichter

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trichter0
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Posts by trichter

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Comment: C: edgeR - problems with coefficients and decideTests
... Thank you very much. Following Chen, Lun & Smyth, 2016 (a very good walkthrough!), i finally got results with the QL-Framework and a defined contrast: summary(is.de) 1*groupsA -1*groupsB Down 8 NotSig 725 Up ...
written 22 months ago by trichter0
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edgeR - problems with coefficients and decideTests
... Dear Community, i have just started edgeR properly today. I have a dataset of 59 spatial replicates of one soil type (plot scale). Analysis yielded that 9 of those location contained very differently assembled, but similar communities (i.e. i have two clusters of highly similar communities). Very f ...
edger written 22 months ago by trichter0 • updated 22 months ago by Aaron Lun25k
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QIIME, R and bioconducter
... I try to run http://qiime.org/scripts/normalize_table.html on my data. The script requires R with Biocondcuctor. The environment is Ubuntu 14.04 LTS, R 3.3.3 (/usr/bin/R) and QIIME 1.9. The script has halted at several points, in which R couldnt find specific libraries, e.g. optparse, (installed f ...
R qiime written 2.7 years ago by trichter0 • updated 2.7 years ago by James W. MacDonald52k

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Popular Question 22 months ago, created a question with more than 1,000 views. For QIIME, R and bioconducter

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