User: Roger

gravatar for Roger
Roger0
Reputation:
0
Status:
New User
Location:
Last seen:
1 week ago
Joined:
8 months ago
Email:
r**********@gmail.com

Posts by Roger

<prev • 5 results • page 1 of 1 • next >
0
votes
0
answers
114
views
0
answers
DiffBind: modify overlap without re-counting?
... Hi, I have a rather large dataset (100+ samples and growing) and I would like to examine the effect of modifying the minimum number of samples where a peak must occur to be included in my DBA object. As far as I understand, one can use the argument minOverlap in dba.count to achieve that, but this ...
diffbind written 4 months ago by Roger0
0
votes
1
answer
163
views
1
answer
Error computing metrics with ChIPQC (Bioconductor v3.5, ChIPQC v2.1.12)
... Hi, After updating R to version 3.4 and Bioconductor to 3.5, ChIPQC stops working at the "Computing metrics" step. The error messages make me suspect it might be related to changes in the 'BiocParallel' package affecting the bplapply function, but that's just a guess -- what I know for sure is that ...
chipqc chipqcreport written 5 months ago by Roger0 • updated 5 months ago by Thomas Carroll390
0
votes
3
answers
246
views
3
answers
Comment: C: Error involving ChIPQCreport
... Hi Tim, As I told you via email, the issue is fixed on ChIPQC 1.10.3 and now the report is successfully generated. Thanks! However, in case anyone reading this stumbles upon the same, I would like to report an error uploading the ChIPQC experiment with R version 3.2 and Bioconductor 3.2. The error ...
written 7 months ago by Roger0
0
votes
3
answers
246
views
3
answers
Answer: A: Error involving ChIPQCreport
... Hi Thomas, Thanks for your quickly reply and apologies for my delay - I have been away from the office for a few days. I tried your suggestion, but unfortunately it did not work. I have just sent you an RData file containing the ChIPQCexperiment object I created (sam). I hope I am not doing anythin ...
written 8 months ago by Roger0
2
votes
3
answers
246
views
3
answers
Error involving ChIPQCreport
... Hi, I have only recently come across ChIPQC, but I find it incredibly useful, especially in combination with Diffbind. Unfortunately, I can only use some its functionalities at the moment, as I keep encountering an error when I run the ChIPQCreport function: sam = ChIPQC("DBsheet_SzabiChipSeq1.cs ...
chipqc written 8 months ago by Roger0 • updated 7 months ago by Thomas Carroll390

Latest awards to Roger

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 316 users visited in the last hour