User: brandon.le

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brandon.le0
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Posts by brandon.le

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Comment: C: BSmooth error during the smoothing step for a subset of files
... Hi Peter, I will try your suggestion with different ns and h to see what works best for soybean.  Thank you very much for looking into this problem. Are there plans to examine parameters for non-mammalian, non-CG loci in the future? In plants, non-CG loci are highly prevalent. Best, Brandon ...
written 2.7 years ago by brandon.le0
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Comment: C: BSmooth error during the smoothing step for a subset of files
... Hi Peter, I attached a link containing the smallest CHH files that generate the error. Interestingly, when I reduced the same data file to contain 1M or 10M loci, the smoothing step worked without any error. When I increased the number of loci to 12M, the error appeared. This is odd since the numbe ...
written 2.7 years ago by brandon.le0
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BSmooth error during the smoothing step for a subset of files
... I have a problem while smoothing using the bsseq package. I imported bismark coverage files that I previously separated based on cytosine context (e.g., CG, CHG, CHH). I was able to processed data for the CG and CHG context  following the manual but when I tried to process the CHH data, I obtained t ...
bsseq bsmooth written 2.7 years ago by brandon.le0 • updated 2.7 years ago by Peter Hickey460

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