User: domenico.somma

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Posts by domenico.somma

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use control_condition in heatmap with cummeRbund
... Hi, these are my samples: > samples(cuff_data)   sample_index sample_name sample_name parameter value 1            1     S80A_0h        <NA>      <NA>  <NA> 2            2     S80A_3h        <NA>      <NA>  <NA> 3            3       wt_0h        <NA>   ...
cummerbund heatmap written 2.6 years ago by domenico.somma0
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cummeRbund heatmap for specific isoforms (not genes)
... Hi, I have done my RNA-seq analysis, I'm new about R and I am trying to have a heatmap with all the differential expressed genes. With some tutorials and cummeRbund I can create the heatmap for the gene's isoforms (here the code I used, for example) > myGeneIds<- c("IL8","RELB","TNF") > ...
cummerbund heatmap isoforms transcript_id written 2.6 years ago by domenico.somma0

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