User: Jane Park

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Jane Park0
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Posts by Jane Park

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Comment: C: Correct contrast for testing multi-level interaction effect in limma using combi
... Thanks for the clarification, Aaron. It looks like the separate up/down statistics from decideTests look slightly different between the two approaches, as well as the results of topTable. Why do these differences appear between the two approaches? Thanks again for the input! ixn1 <- contrasts.f ...
written 2.6 years ago by Jane Park0
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Correct contrast for testing multi-level interaction effect in limma using combined factors design matrix
... Hi all, I'm having a hard time figuring out where my contrast matrix has gone wrong. I'm interested in testing interactions for a multi-factorial RNA-seq project. The project is ultimately a 2x4x4 factorial design, but for the sake of simplicity and making sure I'm using the package appropriately, ...
limma rna-seq limma design matrix limma voom limma contrast matrix written 2.6 years ago by Jane Park0 • updated 2.6 years ago by Aaron Lun25k

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