User: MT

gravatar for MT
MT0
Reputation:
0
Status:
New User
Last seen:
1 day, 5 hours ago
Joined:
2 years, 8 months ago
Email:
t*************@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by MT

<prev • 6 results • page 1 of 1 • next >
0
votes
1
answer
40
views
1
answers
Comment: C: tximeta error in fetching genome info
... Thanks Michael, you are right. I tried to update all packages but GenomeInfoDb gave an error and I did not noticed. I had to update it manually downloading the package. Thanks again now it works like a charm. ...
written 2 days ago by MT0
0
votes
1
answer
438
views
1
answers
Comment: C: GenomeInfoDb's Seqinfo() error on hg38
... I have a similar issue: https://support.bioconductor.org/p/127017/ Could you please help me? Thanks, M ...
written 3 days ago by MT0
2
votes
1
answer
40
views
1
answer
tximeta error in fetching genome info
... Hello, I am trying to quantify human transcripts mapped with salmon in some RNA sequencing (GSE107467) using tximeta. This is the code I use to import the annotation file and the transcript file. dir2 <- system.file("extdata", package="tximeta") indexDir <- file.path(dir2, "gencode ...
rnaseq tximeta written 3 days ago by MT0 • updated 3 days ago by Michael Love26k
5
votes
1
answer
107
views
1
answer
batch correction in DESeq2 > matrix not full rank > mitigate
... Hello, I am a novice and I am interested in comparing two kind of cells coming from different RNA sequencing experiments published. The design would be something like the following: sample cell batch 1 type1 1 2 type1 1 3 type1 1 4 type1 2 5 ...
deseq2 batch correction written 28 days ago by MT0 • updated 28 days ago by James W. MacDonald52k
0
votes
0
answers
540
views
0
answers
gage pca loadings
... I am trying to perform a GAGE analysis on a preranked list of PCA loadings. The PCA is performed on microarray data and the PC1 explains most of the variance among the samples. Thus, I would expect to obtain some gene sets o pathways enriched for this component.  Here's the code I use: xx <- pr ...
gage pca loadings written 2.7 years ago by MT0
0
votes
2
answers
799
views
2
answers
Comment: C: Ensembl 88 is out!
... Thank you for the prompt fix, I was having the same issue and I could not figure out the reason. Kind Regards, Marco   ...
written 2.7 years ago by MT0

Latest awards to MT

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 143 users visited in the last hour