User: forestylake

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forestylake20
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Posts by forestylake

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Comment: C: extracting Allele Read Counts
... I've experienced this error recently as well...here you go https://support.bioconductor.org/p/93347/#93373 I just followed the advice here and re-installed the affected packages using type="source".    ...
written 2.4 years ago by forestylake20
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Need help interpreting DexSeq results from plotDEXSeq function
... Hi, I have some differential exon usage results generated by DexSeq, but when I try to make sense of the them using the plotDEXSeq function, it becomes puzzling to me why some exon fragments are significant and others are not (currently setting FDR < 0.001, because my data has way too many signi ...
dexseq written 2.4 years ago by forestylake20
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Comment: C: Problem running dexseq in parallel using BiocParallel
... Thanks a lot this is really helpful information! Well macos10.12 gives me more trouble than I expected (face palm).   ...
written 2.4 years ago by forestylake20
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Problem running dexseq in parallel using BiocParallel
... Hi, I am trying to analyze differential exon usage patterns with dexseq (R version 3.3.3, DexSeq version 1.20.2) and everything works great when I tested with first 5000 bins from my data, but now I am having problems running the full dataset in parallel. Specifically, I followed the manual and run ...
dexseq written 2.4 years ago by forestylake20 • updated 2.4 years ago by s.w.vanderlaan20

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