User: sudhirjadhao2009
sudhirjadhao2009 • 0
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Posts by sudhirjadhao2009
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... Dear All,
Greetings for the day!!
When I running CexoR, I am facing below error.
Error in if (C != 0 && D != 0) { : missing value where TRUE/FALSE needed
Calls: cexor
Execution halted
Command used
rep1 <- "CTCF_replicate1.sorted.bam"
rep2 <- "CTCF_replicate2.sorted.bam"
rep3 &l ...
written 2.3 years ago by
sudhirjadhao2009 • 0
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... Hello Everyone,
I want to analyse chip-chip data. I have downloaded CEL file and normalized data file from NCBI geo.
1. To call peak using CEL file, I will need bpmap file. I have downloaded bpmap file from different sources.All have extension like M01R, M02R, .. ,M14R. But for my data I will nee ...
written 2.6 years ago by
sudhirjadhao2009 • 0
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... Thank you for replay.
I got your point . but whatever number is common, I want to extract id of those common peaks
Below is the summary of my data.
summary(ol$peaklist)
Length Class Mode
si8444DHTR1S16 803 GRanges ...
written 2.7 years ago by
sudhirjadhao2009 • 0
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... I am finding overlapping region in two chipseq samples. The number of overlapping peaks in ven diagram are different from what you get in ol1$overlappingPeaks and ol1$peaksInMergedPeaks. For specific peak the ven diagram number is same as in ol1$peaklist. But not for overlapping peaks.
In example ...
written 2.7 years ago by
sudhirjadhao2009 • 0
• updated
2.7 years ago by
Ou, Jianhong • 1.2k
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