User: ecpierce

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ecpierce0
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Posts by ecpierce

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Comment: C: AnnotationHub-cant extract database
... Hi,  Sorry for the delay.  There is a limit on how frequently I can post here.  Here is her sessionInfo() R version 3.3.1 (2016-06-21) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7 x64 (build 7601) Service Pack 1 locale: [1] LC_COLLATE=French_France.1252  LC_CTYPE=French_Fran ...
written 7 months ago by ecpierce0
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Comment: C: AnnotationHub-cant extract database
... This is my sessionInfo And this is my sessioninfo: > sessionInfo() R version 3.3.3 (2017-03-06) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X El Capitan 10.11.2 locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] parallel  s ...
written 7 months ago by ecpierce0
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Comment: C: AnnotationHub-cant extract database
... These are my coworkers commands: > ah=AnnotationHub() snapshotDate(): 2017-04-10 > query(ah,"Pseudomonas") AnnotationHub with 35 records # snapshotDate(): 2017-04-10 # $dataprovider: NCBI, ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/, Inparanoid8 # $species: Pseudomonas aeruginosa, Pseudomonas aer ...
written 7 months ago by ecpierce0
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Comment: C: AnnotationHub-cant extract database
... I got the number from here because my query didnt seem to be working:  error while making database using Annotationforge package I get the exact same output as you do when I submit this Pseudomonas query.  However when my coworker (on Windows machine) does this query, she also gets an entire list o ...
written 7 months ago by ecpierce0
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AnnotationHub-cant extract database
... I'm trying to extract a certain entry from annotationhub, but I keep getting a "Public" error.  Any idea how to fix this? library(AnnotationHub) hub <- AnnotationHub() org.PA01.eg.db <- hub[["AH48516"]] Error in hub[["AH48516"]] : Public I am able to extract other entries e.g. "AH4" ...
annotationhub written 7 months ago by ecpierce0 • updated 7 months ago by Valerie Obenchain ♦♦ 6.4k

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