User: morovatunc

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morovatunc0
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Posts by morovatunc

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Comment: C: SomaticSignatures: Transcription Factor Specific Mutation Signature Enrichment
...   ( I just saw your comment after a long time) Well I think answering questions of the tool that you have created is one of your greatest responsibility. Because I am putting the tool that you coded ( which I truly appreciate your work and without your work I wouldn't have done this analysis.) in ...
written 22 months ago by morovatunc0
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Answer: A: intansv - problem reading vcf output from delly ver 0.6.7
... I am having the exact problem. have you found any solution ? Thanks   ...
written 22 months ago by morovatunc0
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Comment: C: SomaticSignatures: Transcription Factor Specific Mutation Signature Enrichment
... Any updates ? ...
written 23 months ago by morovatunc0
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Comment: C: SomaticSignatures: Transcription Factor Specific Mutation Signature Enrichment
... First of all, thank you for answering and spending time. We are working on breast cancer WGS data and analysing oestrogen receptor binding proximity mutations. (We say there is an enrichment of mutation frequency on these regions with compared to the whole genome) 1)Specifically, what do you mean w ...
written 23 months ago by morovatunc0
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SomaticSignatures: Transcription Factor Specific Mutation Signature Enrichment
... Hi, Background: I am analyzing TF proximity mutations in ICGC cancer cohort and I would like to prove that upon TF binding mutation signature profile changes within binding regions. When I analysed TF proximity mutation with mutations signature analysis packages (such as SomaticSignature). It giv ...
somaticsignatures somaticsignatures package written 23 months ago by morovatunc0

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