User: S. K.

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S. K.0
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Germany, Heidelberg
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1 day, 14 hours ago
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1 week, 1 day ago
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s***@kernelspace.de

Posts by S. K.

<prev • 5 results • page 1 of 1 • next >
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Answer: A: beadarray: readIllumina with sample sheet broken due to Illumina switching to 12
... I looked at readIllumina.R in more detail and it seems that the condition for the if statement in line 82 always evaluates to FALSE due to misplaced parentheses? Currently it's written as: if(all(nchar(allSections))>10){ chips <- unique(as.character(substr(allSections,1,nchar(al ...
written 3 days ago by S. K.0
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Comment: C: beadarray: summarizing iScan data is not working
... Just a wild guess but might be related to another problem of mine due to longer chip identifiers since last October: http://support.bioconductor.org/p/95307/ ...
written 3 days ago by S. K.0
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beadarray: readIllumina with sample sheet broken due to Illumina switching to 12 digit chip identifiers
... Hi, I am still trying to get beadarray's readIllumina() working with recently acquired data from HT-12 v4 beadchips and using a sample sheet. No matter what I was trying in that sample sheet, I always got: Error in analyseDirectory(dir = x, sectionNames = as.character(dirs[[x]]), : Directory ...
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beadarray: summarizing iScan data is not working
... Hello, I am trying to read Illumina HT12-v4 beadarrays with beadarray that were scanned with an iScan system. All necessary files are residing in the current working directory and I am not using a sample file. library(beadarray) processSwathData() ExpBData <- readIllumina(illuminaAnnotation = ...
beadarray iscan written 8 days ago by S. K.0
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beadarray: Make grep in readSamplesheet case insensitive
... Hi, I was having trouble reading my samplesheet from a recent iScan-run of HumanHT12 chips with beadarray and noticed this is probably due to readSamplesheet not grepping case insensitive for [Header] and [Data], so [HEADER] (which was in the file I received) is not found and results in the error: ...
beadarray bug written 8 days ago by S. K.0

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