User: I.Castanho

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I.Castanho20
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5 months ago
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Posts by I.Castanho

<prev • 4 results • page 1 of 1 • next >
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Comment: C: DESeq2 likelihood ratio test (LRT) design - 2 genotypes, 4 time points
... Right! To be honest I didn't quite understand the listValues argument when writing that part, but it makes sense now! Thank you. Yes, and yes -- that's exactly what I want: genes which vary over time (i.e. with aging), and genes that show a different expression profile over time when comparing the ...
written 5 months ago by I.Castanho20
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Comment: C: DESEq2 comparison with mulitple cell types under 2 conditions
... Done. Thank you! ...
written 5 months ago by I.Castanho20
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DESeq2 likelihood ratio test (LRT) design - 2 genotypes, 4 time points
... Hello, I have a similar experiment to this one: Design formula and Design matrix in DESeq This one might be useful to compare with as well: DESEq2 comparison with mulitple cell types under 2 conditions   I have 2 groups for genotype (Mut vs. Ctr), and 4 time points, with 8 biological replicates ea ...
rnaseq deseq2 design lrt reduced model written 5 months ago by I.Castanho20 • updated 9 weeks ago by maksims.fiosins0
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Comment: C: DESEq2 comparison with mulitple cell types under 2 conditions
... Dear Michael, I have a similar experiment to this one: https://support.bioconductor.org/p/67655/ I have 2 groups for genotype (Mut vs. Ctr), and 4 time points, with 8 biological replicates each. As I am interested in the interactions, I ran my model as you suggested in the manual and in similar po ...
written 5 months ago by I.Castanho20

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