User: hkarakurt

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hkarakurt10
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Posts by hkarakurt

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Comment: C: Retrieving data from NCBI GEO Problem and RNA-Seq Data Analysis
... Yes there is only one supplement file and it is the Counts file. Mostly there are RAW_data files in supplemental files but this data is different. Probably I will use counts data for analyses. Thank you for answer. ...
written 5 months ago by hkarakurt10
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Retrieving data from NCBI GEO Problem and RNA-Seq Data Analysis
... Hello, I am new at RNA-Seq data analysis and I want to analyze the data and do some analyses such as finding differentially expressed genes. My data set is from NCBI GEO and coded as GSE80336. Link is here: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE80336 I see data is not normalized. I ...
rnaseq limma geoquery edger rna-seq written 5 months ago by hkarakurt10 • updated 5 months ago by Sean Davis21k
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Bioconductor for predicting transcription factors from a gene list?
... Hello, I have about 150 human genes. I want to build a transcription factor-gene network so I need to find which TF binds to which gene? Is there any bioconductor package for finding possible transcription factors for gene list? Thank you. ...
transcription transcriptdb written 8 months ago by hkarakurt10
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lumiR error Error in gregexpr("\t", dataLine1)[[1]] : subscript out of bounds
... Hello, I am new at Biocondurctor and trying to read, normalize and analyze a expression data from Illumina platform. I have raw data (non-normalized) as text format and I want to read it with lumiR() command but when I try, I have this error: Error in gregexpr("\t", dataLine1)[[1]] : subscript ou ...
normalization beadarray lumi illumina written 8 months ago by hkarakurt10

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