User: brendan.furneaux

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2 years, 5 months ago
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Posts by brendan.furneaux

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Answer: A: Installing ShortRead - error: zlib not found even with zlib in LD_LIBRARY_PATH
... I believe that the problem lies with the configuration of `autotools` in `r-base>3.4.1b2`, but I'm not competent to fix that. The plus side is that, although `configure` can't find `zlib` during the pre-installation, `zlib` is actually present in any Conda environment with `r-base` and can be li ...
written 7 months ago by brendan.furneaux10
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Comment: C: Installing ShortRead - error: zlib not found even with zlib in LD_LIBRARY_PATH
... In case anyone else comes along here searching for an answer: I've played around with this a bit. It turns out that the problem is not with `zlib` at all; requiring `zlib=1.2.8` ends up meaning that you need `r-base<=3.4.1=1`. Installing `ShortRead` also works with no problems in `r-base=3.4.1 ...
written 7 months ago by brendan.furneaux10
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sangerseqR::read.abif reads float data incorrectly on little-endian systems
... The bug should affect reading SCF files also. problem: UnExportedFunctions.R lines 60-61 f32 <- function(f, n=length(f)/4) readBin(f, what = "numeric", size = 4, n=n) f64 <- function(f, n=length(f)/8) readBin(f, what = "numeric", size = 8, n=n) solution: f32 <- function(f, n=length(f) ...
bug sangerseqr written 2.4 years ago by brendan.furneaux10

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