Moderator: daniel.vantwisk

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Posts by daniel.vantwisk

<prev • 9 results • page 1 of 1 • next >
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Answer: A: org.Hs.eg.db error same ensembl ID in different genes
... The mapping is not incorrect, but based on older resources from NCBI.  The most recent version of org.Hs.eg.db(3.4.1) was built from resources from NCBI on March 29th 2017.  We do not continuously rebuild our annotation resources so that we can allow researchers who are using these resources to get ...
written 6 weeks ago by daniel.vantwisk30
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Answer: A: dada2 unavailable for R 3.4.1
... It appears that your version of BiocInstaller is out-of-date.  The current release version of BiocInstaller is v1.26.0.  Try running the following code and try installing the package again: source("http://bioconductor.org/biocLite.R") biocLite("BiocUpgrade") If this doesn't work, this page conta ...
written 9 weeks ago by daniel.vantwisk30
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Comment: C: Compareequence function is not running
... This appears to be the exact same question as this. ...
written 9 weeks ago by daniel.vantwisk30
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Answer: A: Possible bug: outdated result from listDatabases()
... Thanks for the notice!  I've made the fix.  The output to listDatabases() now returns the appropriate results in the current release version of KEGGREST(v1.16.1). ...
written 10 weeks ago by daniel.vantwisk30
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Answer: A: Cytoband information for rice
... The cytoband information you are looking for can be downloaded from the ensembl ftp site using the following URL: ftp://ftp.ensemblgenomes.org/pub/release-36/plants/mysql/oryza_sativa_core_36_89_7/karyotype.txt.gz ...
written 3 months ago by daniel.vantwisk30
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Comment: C: DEsubs problems with Mus musculus
... After encountering a potential error, it would be helpful if you added the output of the function sessionInfo() to your question so we can more easily reproduce the problem. ...
written 4 months ago by daniel.vantwisk30
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Answer: A: IDMapper issue in PSICQUIC
... The IDMapper() function in PSICQUIC is working on the most current release version of the package(v1.14.0).  You are running an older version of the package(v1.6.0).  In fact, it appears that you have multiple packages that are out of date in your session.  To update old Bioconductor packages, run t ...
written 4 months ago by daniel.vantwisk30
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Answer: A: Installation of samr package on R v3.4 mac OS Sierra
... Possible solutions: 1.) Be sure you have the latest version of xcode installed before installing R packages from source. 2.) The following answer on stackoverflow may be a solution to your problem: https://stackoverflow.com/a/37754162   ...
written 4 months ago by daniel.vantwisk30
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Answer: A: seqlevelsStyle for chrY in Drosophila?
... Thanks for identifying the bug!  It looks like the mapping tables in GenomeInfoDb need to be updated.  We'll post again once the issue is fixed. ...
written 5 months ago by daniel.vantwisk30

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